NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10012174

Scaffold Ga0194115_10012174


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10012174 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7685
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023321Metagenome / Metatranscriptome210Y
F024533Metagenome205Y
F053899Metagenome140Y
F055551Metagenome138Y
F057311Metagenome / Metatranscriptome136Y
F057945Metagenome135Y
F091391Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_1001217410F024533N/AMPVQKTCPKCGVTHNKRGLFCSRSCGNVRKHTEEDKAVRSIKLTEYHLTPEGAATREKSSRMMSAKRKGKSWEEVSVEDFAVDIPDVTDYAADYDDTWQKAERW
Ga0194115_1001217412F091391N/AMAEIYTFVPKQKPKEKNNDELSRLRAKLLELYEVRDTLNKEIRYTKDAINLLEKGEK
Ga0194115_1001217415F053899AGGAGMPQQADFENVMNRIKNLTEYEVQVTVPNEFEFDGPVPFDMSISGGTAWVKVIATSIEEATMKANEYFECKYK
Ga0194115_1001217416F055551AGAAGMNILNANTSKPWMTSEYDVPVLENEEMWSQRVIDEAAQYIWLEIDREQK
Ga0194115_1001217422F057945N/AMMNRQFKWERNGDAHFYYDEKTGKIVGRVNKLALQEIWISLIYIGEYTFTVDDEKHLGQYINLDFAKRATEFYWERESRTLLAGSEP
Ga0194115_100121747F023321AGGAGMFFTQAPQFPTFYTWNDIQRKAEAATIKTIDFNKVMIDHTIAYFDSVTENNFTTYTKKVVNLNKNIAEDAKKIIKSEIKEAKA
Ga0194115_100121748F057311N/AMQKKSLNLKSKKLKLDIEGKTKFFDSVPRGGWWIKFSTYRDRFILLMIISEYTGQTIIRYYAEEQDAVAFINFITTCNAQDTFYSV
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