Scaffold Ga0194115_10011315

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10011315
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8105
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088501	Metagenome / Metatranscriptome	109	N
F095136	Metagenome / Metatranscriptome	105	N
F102822	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1001131512	F088501	AGCAGG	LRDYKFVVIEGVDRGNESKEFLYQCLVRDVIKKRIADRDKAFEFLGRWEMHHPNSKLREDVLYQWQRGNRGKEDEWYDREDKQATD
Ga0194115_1001131513	F095136	AGGAGG	MTEKINKQLIDALEAMCELYVPEDESLENDAVAGYAMNILETAKKTEAEYKNKPLPEDDVWILAQDINPHDPMYPLHFARAVERKHGIGADNG
Ga0194115_1001131518	F102822	AGG	MTQQPMNDDELREYYTSYTLKNNVNLDYNKFVFLVRSIEEHHDIYHDFAAIEALENIENEIIHRACRNGVCED