NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10009759

Scaffold Ga0194115_10009759


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10009759 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9036
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010682Metagenome300Y
F025263Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100097594F010682N/AMVYTPLTNWKYDKSLYHRVQSGPQRTGDDLNLTDTYAVVGESYIYASGEQQTWFGVNDQGADFGLIPAGPVNLSGYLNTDWRAVPPAVSGYWTNYENVLPHASGLLDTYLGYRAQGLYSVAGRTVQTALSPQPGLRNFGMYTWFGAAVPDNQNYDPFNTPSINSPYEYDEATGAFAGNGITGGPGSFQRVRYPSITNPTNDTSGSRAAWVYNYPVYCQVFTEAVRSTAPGQMSVVTRTSYRGKSTRYVPNYGSIYGVLGEGVRGMIRRYSPGTKI
Ga0194115_100097596F025263AGGAGGMTINPNQLSVTKIYPGNYTNVLRYWNEEKTVQYNNANGVSQNLTGQPVGGPVGVIFQPGWIAQQAIGYVDLSYQALGTSNQLDYYTLPYGSGQNGAEQPFLNASVIIPSPDFHKDIRADITNGIQAPSGVYVYRTSLRVDGGDVVSSGVAGGSATPRLTLIPAVAQGLRDSATVVSGQFGTTITGSNSRIANGSTASTNLFDSSSWAALTAQTQWKLFTTANLGGVAASGLAQGSGVYDPRAGVGKLSGQNKALAICEVCWILPDQPPERSDVALQPAGVVESSIYTSTSPS
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