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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020183 Open in IMG/M |
| Scaffold ID | Ga0194115_10009646 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9112 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tanzania: Lake Tanganyika | |||||||
| Coordinates | Lat. (o) | -6.4446 | Long. (o) | 29.9042 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004789 | Metagenome / Metatranscriptome | 423 | Y |
| F007028 | Metagenome / Metatranscriptome | 359 | Y |
| F026542 | Metagenome / Metatranscriptome | 197 | Y |
| F099177 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194115_1000964614 | F007028 | N/A | MPKITKTAMEQSIDSPLDQAVNLLSNEISLTSSPIVICGVNRKINIGNFENIDVYAGVTIPLHGVSFEDKEALTAAVEEAVAYGFSLASKETGERYMLIKESQQGTK |
| Ga0194115_100096462 | F004789 | GGAG | MSSIGPTINPVEKWCWVFCPSCNRCQDKGRYSKCNGCSGRYDRDLKIKVDNEDFCDCKNGVLRWKTQQGRLVLTRFKSNPFKGNVKYEKKTEDERDWDSYVKDMREKMDDPNWNPITIYE |
| Ga0194115_100096468 | F099177 | GGA | MSSYKEQYYSLQESEMQYLIDKAKKGSNGHQEELLKVFSNFLTKYTSLLYYAKFNLNDYDIRRFISLFIKDPGTRFALMKNKPNQKNMKVINECMRGINYMARRYGDEEDIRQTVNLTFFQCINRYERKDSAKGPIPFSGFLYSYFFYLLKKNVDTFLIDQLGRKTFPLLDDDATMDESDENYVIGFKADPVEYSLEQMLSTDKIDEFWVLGEKNVPPFDRLSIQERQLLKWRYVDGERSSEISLKINEHPNTIREHLTKIKNKVRDLIIELDIDEYAILLSTEKVK |
| Ga0194115_100096469 | F026542 | GGAG | MTIEKLQQLLTDFLAPQLTEVIEAYSSAEKINKYFVEIPELDIVDLGIDNIASLVARASNVYGRSARFAGMARAHFKIVEGNYKRIYKANRVGKNEAEREASAMTAAEEQYSEMVTAEAMVSLAESMENSARIASESARKLMDKIQSMQVAAYREEKGSYLESDFSTY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |