Scaffold Ga0194115_10008200

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10008200
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10174
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020339	Metagenome / Metatranscriptome	224	Y
F023092	Metagenome / Metatranscriptome	211	Y
F062691	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100082002	F062691	AGG	MSNVKCFTFKTHQTIMGEVVDDGDVGFTLKNPMQVIAVPPRSANDSGGVGFAPYLAFVEEFDSGVSFKYDDILTVNTPVTDLLNQYNRMFSKIEIAKPGLVV
Ga0194115_100082003	F020339	AGG	MSNITKIAKQLAEANPKLSKAYKYDLVMREFDNKIELIGLVDDPTYDISNFVGREMLFPKKWVTLDVYEPSTRVTV
Ga0194115_100082008	F023092	N/A	MSKVKNNPIKLINKYTKEEVYTRDYNNVIKEGSNEFIKVFNQSNPQRTYLVNRTAFAIAK