Scaffold Ga0194115_10007427

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10007427
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10869
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010026	Metagenome / Metatranscriptome	309	Y
F011666	Metagenome	288	Y
F033013	Metagenome / Metatranscriptome	178	Y
F056612	Metagenome / Metatranscriptome	137	N
F079978	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1000742712	F079978	N/A	MKLYAPEFAEMYIWATADPKSSKPSYSPSKSTTAPPNAVYGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYKETDF
Ga0194115_1000742714	F033013	N/A	MAIQLTAKASSLKTVMLQLDPELYVRIKAAAKHHNIPAAVAMRQILEQGIEEVEANV
Ga0194115_1000742717	F056612	N/A	MTDFQSAFDAKLTLFNVKEKKSEKAPDKTGSIEIELSEAMKLADYLTAHPGEEGYGGKTVIKIPVSAWDQRAPSGTEYISGKVWAKKPEPTVNDVPVF
Ga0194115_1000742723	F011666	N/A	MEWHPIERTQESYFSEVATVKVLDEWLNNGDIKGIYNAALLLNTMLHQQRTMTKWLAGEAARNLGRPGLADEMLQNAINQSD
Ga0194115_1000742729	F010026	AGG	MAVKAKTGAKQIQHQPGKPKRTKQGQGQHSLPSHGRKKMRGQGR