Scaffold Ga0194115_10007013

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10007013
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11283
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F023840	Metagenome	208	Y
F039113	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1000701315	F039113	N/A	MDSAIREIKQIRDALLSIDTSLQLIAANKTNDKRTMAFVSKKVICQRLNIPSVALDKLIYQGITSGGQSGLVEGRHFCKIDPTEQNSSKFLYDPQAVIQSAWSNFQNNV
Ga0194115_100070133	F001215	AGG	MSSTSTNKQPLMVDRPFLRGAKINSGTTVVTNASSPDFGDLVQLVRVGDVPSEDGGLVEDLFVVSNEGYPNNAGVRSAAFGVYIYAPNQAAPSTSASLLIGKFEVGLSGDTEGLIQRVELPATVAPTPQTGDTNLARPIEIGKSEALYLEKGYILCIGYLGNGPAAVSGGLSASGISIFAQGGFY
Ga0194115_100070137	F008401	N/A	MQILANVSASTAFTSLTPMETARLLTIAQTAERLNCSAGFVRKRIALTESNQPGGWPKGIFVNLQPNGAKSLYRINQDALQDYLNGDVEGSVEEAKVEASAACTL
Ga0194115_100070139	F023840	AGGAG	MRSDDGHLVVGLTLEDDFVLTRLKNKARNLRGDARDQYLWKTIFRFVCRERAYKSVMDEIGVAIDTNIDIFED