NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194115_10004928

Scaffold Ga0194115_10004928


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10004928 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14099
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F002876Metagenome / Metatranscriptome524Y
F037205Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_1000492812F000973N/AMKYGLRKSLEDIAFELKGIKNVLSSMWHSRYSNGEIDVLNPEAYADEYISTEECGKRLGVSDQTIRNWIAIGRRDPNKGWKEGIHFVNVSPDPNRKAVLRVPWNQLVQSFSKNRDLESRDLRGKGDHENNMYKTDRGFLE
Ga0194115_1000492822F002876N/AMACKKSELVSAINSFGAARATGDLNLINFAANVIGQLIDTLEFAEEEVETKDEEVKEATP
Ga0194115_100049287F037205N/AMARFYNPREGQERRPVEFGYDPRPDAGTSGAEVSDLNPEQAYDTDLRRLPEEERFQAESLNDQQGRVAKFMRAAKSAGAYKLRSGIDEPMIRGRTPRVPASIQGVSLPTTGDSGGRSGSIGYANKPKPRSGRAYNYLDAFS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.