Scaffold Ga0194115_10004667

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10004667
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14592
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008617	Metagenome / Metatranscriptome	330	Y
F041151	Metagenome	160	Y
F050358	Metagenome	145	Y
F080003	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1000466713	F008617	GGA	MNRINNAICLLIAAATFTMIGVEACQFHGSTHSGTQEVQR
Ga0194115_1000466715	F080003	N/A	MSQFEVGQVYYGTLCVAHSDFPVRCIKRTEKSVWFEHVTHPQHYAQSRVKVHKYADQEVATFRRWYISSTKQTGGDFDLMTI
Ga0194115_1000466716	F050358	N/A	MQTTESQLEATKLLLSEAQTEYMHCFARGDFAACGPAKRKVNKYMKAVQFLVAQKLAAR
Ga0194115_100046675	F041151	N/A	MSTAQDLIDELLAIRSQKEELDAQEAFIREQLQGAMALGEMDEHQTADGVYQFANAKFSRCERNSYKLSPEADTAIRTIKERDIEAGLATRNVTIYYRLDTMK