Scaffold Ga0194115_10004572

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10004572
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14806
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004344	Metagenome / Metatranscriptome	442	Y
F016152	Metagenome / Metatranscriptome	249	Y
F072102	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_100045725	F072102	AGG	MADEVIVLTGIKETMDALKQFDKAAAKKFNKVINDELTSAERKADNLVVQFTNPVYGTPMRGWRKTPATNPRTRGGAGWPAWDVGAIQAGITKSRAQGKVRGDFTTSAGALINKDPAGAIFEVAGRRGNASRNQFIRYLSNSFGKASRLIWAVVDKDKEAIQRRVAAALEDAKKTLQNNLNSRS
Ga0194115_100045726	F016152	AGTAG	VEFGLSPNDLLDAPDGILEAMLAYLKEKAKANKYGR
Ga0194115_100045727	F004344	AGGGGG	MDGLSLKIKTNDGVDSVFSLRPRTIVAFEQKFGKGLAKLFAEDQKMEHIYFLAWQSLKDNGRVVKPFGPEFLDTLESVEMISDPNSESTATV