Scaffold Ga0194115_10000886

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10000886
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40901
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (87.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005346	Metagenome / Metatranscriptome	403	Y
F006344	Metagenome	375	Y
F014007	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1000088611	F005346	AGGAG	MVYSNALEYLESKLQEERMLIIEALIQGKLDEAEYKRLCGALQGLELAKNHIKDLAKRLERNDE
Ga0194115_1000088614	F014007	N/A	MDATVLVPLIDEAVPLPANAAEALPELSREQEIKMRARTIKLISDLTGTPIVPTQQHKDEAEELARQMMDDPKKRIEFSKYPNESMAYLAGMIQQSNCALVDDLSEYKNYVINKYVYEIEHNDDPKVRMTALTKLGEVDGVDAFKRRTEITHVVKPIEEVESELLETIKTIRSRRDAPKAIEMQPEDYEIVEDRIESDEK
Ga0194115_1000088632	F006344	AGGA	VEIEDDILDLIQALPHEINDSSTTTEMKFLTLGGVLWACHNEIQRLRKEVARLKKGGKKK