Scaffold Ga0194115_10000820

Overview

Basic Information

• Taxon OID: 3300020183
• Scaffold ID: Ga0194115_10000820
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43123
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (56.25%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4446
  • Long. (^o): 29.9042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002317	Metagenome / Metatranscriptome	571	Y
F003805	Metagenome / Metatranscriptome	467	Y
F006109	Metagenome	381	Y
F014614	Metagenome / Metatranscriptome	261	Y
F017824	Metagenome	238	N
F027171	Metagenome / Metatranscriptome	195	N
F051901	Metagenome	143	N
F091495	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1000082015	F091495	GAGG	MARRIGTRRQDVRNLATDALQAINTATRQAAVEIMNDLGKLGPAYSGEFRDSWIAVPAGKGASGSAGGEYPYQLSDVPELSLSRREVARVTKFTIENTQPYAEYALDLREGRFYPPDEFGPIKKPVAEGSRAAGLTKRGAVTEGAGEAKSTAELDWYTTYTNGGGLQKALERGVKLGFKP
Ga0194115_1000082040	F001841	AGAAGG	MNTPNFFLGLMRVIAWAFWRDPVAKAEPPQPKRPRKPVLGYTVGDIPFELFAIVRIEWYRKGMAYEVEEYQIEESDDATAQFHYVVGTALKQGADVAVLTQYEPAALGVPE
Ga0194115_1000082042	F027171	AGGAGG	VIIDLDDFSMDADGLVTVTAVVDEMVLTHQQTAFDPPEYGPALCRGTFYLSDEDLIPATDAELCRLFYDRVDDWEVLDPDD
Ga0194115_1000082044	F014614	N/A	MTDWYADYYRQSRGYNWHDLMEMRQQKPRTDLPVPDCFKHQFADRAAYDAWVEQKRRDYF
Ga0194115_1000082053	F006109	AGG	MAGTWWVTAIFGSEGVGVTRSKADASSWATYEQALMAAQTVAARTHSFVAVHSIDEPSYQQK
Ga0194115_1000082054	F017824	N/A	MNPLQWEENRDLKLGEGVSRTSSEKAKLFELQIWLAGQGAMRDLIRAESLQQAIEFAKNRYPNCRIDVPPQAAKKPRLARSKTSPSVVANSRRKLADKK
Ga0194115_1000082055	F051901	GGA	MTVPKINFTKADAEMAKADYLDELFYRDGRDQLSHPLHGTYTGLYQKYTLKQSS
Ga0194115_1000082056	F003805	N/A	MRPIEHTPESSFHKTAQDRWLVDLFNKQDYRGLLEAALVLNTLHQMERTKANWAIREAADNLADQFGLDRDSA
Ga0194115_1000082060	F002317	N/A	MENHDEAVYHAEPPHNPFNQVVPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLESRVRLIEMRVGAYSQNK