Scaffold Ga0194115

Basic Information
Taxon OID	3300020183 Open in IMG/M
Scaffold ID	Ga0194115_10000245 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020183 Open in IMG/M

Scaffold ID

Ga0194115_10000245 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	84735
Total Scaffold Genes	156 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	105 (67.31%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

84735

Total Scaffold Genes

156 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

105 (67.31%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-6.4446	Long. (^o)	29.9042	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Tanzania: Lake Tanganyika

Coordinates

Lat. (^o)

-6.4446

Long. (^o)

29.9042

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F007305	Metagenome / Metatranscriptome	353	Y
F009680	Metagenome / Metatranscriptome	314	Y
F086677	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_10000245143	F000325	GGAG	MKTADGNDKLGKGCVVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANIVTEKNKIRAMILDAKRREKSIRWHERGDWFLNGELDVEYVANVTWACESILADGDSLPDMWFYTHIYDSRLVSLDKYMAVYASVHDDNDMGEALAQGFKLFAWCDSDEKIAPKRPRSKKKADAWRASLPKLVVLNATKFVVCPEIRRGRATITCTGTKDSISCDLCVRGLANVLFPAH
Ga0194115_1000024522	F009680	GGAG	MSETIIHFWENIATTSIGIIVTMIGFWVTIGRNMATKTEVAHMIETQSPYNQDRQFIMERLATNKETQAAFASALQRNTEVMTELKIQIATLGKTLEALEERIDK
Ga0194115_1000024571	F086677	N/A	MLNYQIDYSDWSNEGGYCQVYPIVGYCGLVFKEFRNKKKATRSYTYHKKLEKFDLAPKIHSKVCRLKFADDGDMVFDDPSDWGYIIEKATIDRAATKISMKQIQKLVNDINEKTGLKFWDCHWYNVGLVKRGRTKKLVCIDTGEESFDGLSNAWGNPDPGPKCSYCKRYECKCEED
Ga0194115_1000024594	F007305	N/A	MICFTQNNPIKTNAKAHRIGEQFNLAKYIEYPFVHAESHLISNLLDSYNTIDPNWNIVVLRINRKGLILGSKPCENCNKLLNAVGLNSCYHSNDDGSFTRL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194115_10000245

Overview

Ecosystem & Geography

Associated Families

Sequences