Scaffold Ga0206129_10111252

Overview

Basic Information

• Taxon OID: 3300020182
• Scaffold ID: Ga0206129_10111252
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1401
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodobacter → unclassified Rhodobacter → Rhodobacter sp. BACL10 MAG-120910-bin24 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047554	Metagenome	149	N
F057929	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_101112522	F057929	AGG	MISKTDEKHSDRDGQFLQKNVTPTANLSLVVSNLVQRFRLSGTETISWFVAEGVLVQFDENFDRLERSQMRHRMLNDLYQSQTATVLIERCDNFPEPHLDGNYCQFGGCSGIGDNVRPTADIRLKSDIYDYVEKAFVMPDPQFEFELRFIQATQRAEMSVIFDKLTEPDSGGLTNHFTLDTDAIGGTGLWYADCKLVEIANVSKHSELNRT
Ga0206129_101112523	F047554	AGGAG	MTAEYIIKKEHVVIEDDVHAILDLKKAGEIECYAIPEYDLVAWNKEEDCVFGLLKQTGDTYNLSFNVANHGEYDLELDKVLKVCNERFEAMLGW