Scaffold Ga0206129_10104376

Overview

Basic Information

• Taxon OID: 3300020182
• Scaffold ID: Ga0206129_10104376
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1473
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040577	Metagenome / Metatranscriptome	161	Y
F048887	Metagenome	147	Y
F068602	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_101043762	F040577	N/A	MTELQRISAEIVEIFQNKISKLTKDQAEQLNIHNNSMNFYVQLGDEQKALWEAKNTLEYLEEITQ
Ga0206129_101043763	F068602	AGGAG	MEDDDPHADEMLEKSNFIVNQLAKDIHLYSDQQIEDILLMQQSMEFFLKQDDTNKAIIECRNLYNYLSEITQ
Ga0206129_101043764	F048887	N/A	MHIRREIDNLLDKMIEITANKKESNKESRELNEILDEIRRKTDNGKRAKGMWTDSPEFVSIQ