Basic Information | |
---|---|
Taxon OID | 3300020182 Open in IMG/M |
Scaffold ID | Ga0206129_10069192 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2040 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000375 | Metagenome / Metatranscriptome | 1217 | Y |
F016668 | Metagenome / Metatranscriptome | 245 | Y |
F039591 | Metagenome | 163 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0206129_100691922 | F016668 | AGGA | MIPVGQLRLMLRKAGLEFVITRVEGNVAHVNIMVQEGSDVHS |
Ga0206129_100691925 | F000375 | AGGAG | MTKLYDLEPMILDCWRVCNDLETVFKQIGDGEREPTHDEMMNTLMGMQQLYEWKFEQLFFKYEEVLRDRQ |
Ga0206129_100691927 | F039591 | GAGG | MKLMFLLIWFDAVPEQGIRYHHLGTFDNETKCMTELRIASVLVNDKLETIECIGVQVDD |
⦗Top⦘ |