Scaffold Ga0206129_10022978

Overview

Basic Information

• Taxon OID: 3300020182
• Scaffold ID: Ga0206129_10022978
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4743
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003058	Metagenome / Metatranscriptome	510	Y
F003647	Metagenome / Metatranscriptome	475	Y
F005817	Metagenome / Metatranscriptome	389	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_1002297810	F005817	N/A	MRSNLLSRLKPEFKKGLEDNKLRYPSMTNDIEFLLTQIFYYDDLTVRQVLNILVFSDMEYLDRKSFDWRYGEDIFEIENNVA
Ga0206129_100229782	F003058	N/A	MSKLADIIVDKIIERQKAYDEEFKADIQSMVDENTNLEFGVITQDELIIEEIDGLQERLAQLEEKEDYESARIVARKIKHLKNKYNL
Ga0206129_100229789	F003647	N/A	MVMCEWTLADIKNRASNKAFAKVTILTLDVETYKEDLRTGNIGGVTYEEFEQVVKGHETELQIWNYITELIEKQ