Scaffold Ga0206129_10019055

Overview

Basic Information

• Taxon OID: 3300020182
• Scaffold ID: Ga0206129_10019055
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5465
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002390	Metagenome	565	Y
F008400	Metagenome	334	Y
F020911	Metagenome	221	N
F062251	Metagenome	131	N
F100987	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_100190551	F062251	N/A	TMRTLNKIMNKIIFTAMFIAAVITWMWMIFAWLIAIIGG
Ga0206129_1001905511	F002390	AGG	MKHATKLFPIALQELIEIGEKARKQREQGERAGHVARPRETRACKQVACREKQAKQLQLQLQTRI
Ga0206129_100190552	F020911	GGAGG	MTEEEKEKAKSYSTSFRLNEIANARLMTFCELTGMNKSEVVKAAISQFIAPTLQNANVIPPSYNPRVHACVDNINISKDILCCNTTPSKKETQKEETHAWFQAFWEVCKNQQFARRVVKTIRQNWDALAELDPKLVADKYNQHFHEKGNYAKHPNSWLNDGGYDNVVDNSVSTHGLNFDVTMKHPDD
Ga0206129_100190554	F100987	GAG	MSAFPWDNSDKDSLEQLQALLKETGREVTLQELQEMQRKVWRETAGLPNDEEIEYSLNRQEGA
Ga0206129_100190556	F008400	GGAG	MSKQDNSLLPKLALGMTLFLALKFGTKVLAWWAKRNKKGEA