Scaffold Ga0206129

Basic Information
Taxon OID	3300020182 Open in IMG/M
Scaffold ID	Ga0206129_10018167 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020182 Open in IMG/M

Scaffold ID

Ga0206129_10018167 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5661
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5661

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (31.25%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006685	Metagenome	367	N
F010465	Metagenome	303	Y
F047385	Metagenome / Metatranscriptome	150	Y
F071009	Metagenome	122	N
F086945	Metagenome	110	N
F088798	Metagenome	109	N
F090089	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_1001816711	F071009	N/A	MTTDPENLPSLDDESLQALITHYTGLKYKLTDNLRVRERLVELQDEQLKRQIESLGNYEPIGDDIKNQLNQ
Ga0206129_1001816712	F010465	N/A	MNKPILLDPIDMTEELMFHMFNNDMNRELDGEFLNLYLSLQHYKEYLEKLENY
Ga0206129_1001816715	F086945	N/A	MSFDINEEITDCPFDWSGIDHRAISDGWYHFWGETQITSFETDKKGRYVRDEDGKLIAHRTKIPRKLPRTWFNKQQEGQEY
Ga0206129_1001816716	F006685	AGGA	MTEEKKTKGKAWRMREWGRAQYRNRQAKLRMDGESSKTEASKRMLRVMAPKLGKKVDDFIDTFGGSTEHTTPLFLTFVLDMCPYQIASLALQTFLDNLQFNLPVGRMAYKIGKAFENQARWDKALDTMHPSKLDLLAMDDRSKAMKLKQFYDYEDERFTLWDSKCKAGLGAWLLEEIRIETGLWVMGFATGRQKGHKAERIVRATNEFTDWVSRFDSWKETTRVFKMALPEEPVDWYGLVGGGYSVKHMPPQKLFTGKPVSNFKPYESSYQHAMSALNKLQKTAWQINKDVLAITLKCWENKRVIGNIPNFGEIDEQPRYTGDCPHEFRAWKLKQKDIRTANESNSSKRYQTCRILHLGKVYSEWDKFYFPYRCDYRGRVYALPYYLHPQGSDLAKSLLDFSKGEQVVD
Ga0206129_100181673	F088798	N/A	MNQQIEKLWDLIVNYELTSEQSLQLVTRLNGYTLETMEDVLYALTGYHSYEQFMENQR
Ga0206129_100181678	F047385	GGAG	MKIEQPSDNSLYVTIGNFTYYFDDSIDGENIVARWHLDDEETDTKEDLQIDDKLISKCQ
Ga0206129_100181679	F090089	N/A	MSVTYYLTDHNGNQIAFFYRVDNERYNTVPSILWACRQYPQFQGTASSKGDFIEQAKQTLKEIKKLSVPVRKVCKDCDISLQGMENEGTTCNDHNFNR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206129_10018167

Overview

Ecosystem & Geography

Associated Families

Sequences