Scaffold Ga0206129_10013529

Overview

Basic Information

• Taxon OID: 3300020182
• Scaffold ID: Ga0206129_10013529
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7041
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F015079	Metagenome	257	Y
F036970	Metagenome / Metatranscriptome	169	Y
F048232	Metagenome	148	N
F063610	Metagenome / Metatranscriptome	129	Y
F063642	Metagenome	129	N
F072209	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_1001352912	F072209	N/A	MVRAWFLAELGRLIKFVDATKTIQDDEEMKETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHAGTREERKAILLTVEDLIDLGQIKPPE
Ga0206129_1001352913	F009856	N/A	MKYWFEVEDAQRWGLPAAAVLAHLKYWIERNTSAGEEPCMTQGIKEMAEYLPFLTPSKIKRALVKLEQQEAIYRKPNGFDRRHTYCLGTKPDHAWDESEPSISQNRTIDEPNLARVHIETNTSKRTRENAREELEYQRPTEEEVVEYFRDIGGSDVADQLGQEFHTHYESTGWIVSGTPMAKWKPKARSWLSRMRNKQSNERRKGFNPSGFTPDGLKDFIANG
Ga0206129_1001352914	F048232	GGA	MSKIVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKDKLRQEIARVQKALKELDPDGMFPP
Ga0206129_1001352915	F015079	N/A	MVQAQIESIQGKGDWKGQHGTMYQFEVAFNDGTVGEANSKSQEPPYKVGDEVYYEVKSDNERWGKKLKISKNPPPPGGFQQFQPANPNKDKQIIRGMCFKVAGMAWANQYKHKSFELPHEVMVKDVITLAKKYEKAFNEWMEE
Ga0206129_1001352916	F036970	N/A	MTKYKRWVTAVNRAIVAEMAMQKKTQKDLAEALSIHPVTINRKLKDPGLFFVGELGLLCDTLNIDLKNPPNYGTGAN
Ga0206129_1001352917	F063642	N/A	MEHTVSPLFDEVIQLATPDCINRRDMTLVRKLKNLQEYTVRIEKILEDAKSIIEDHAK
Ga0206129_100135297	F063610	GAGG	MTKRQILHTKIHEKDGKRYKATTWDCTPVGHEDVYNLSRTEWELIEEPRNQMTLF
Ga0206129_100135299	F009330	GGA	VTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFSRHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRQDREVDEGDGNR