Scaffold Ga0206129_10008046

Overview

Basic Information

• Taxon OID: 3300020182
• Scaffold ID: Ga0206129_10008046
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10222
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F023615	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_1000804617	F007770	N/A	MSGEGLTTSFRRTTQTTKSNQQLLREFQKIIYSSRVMKHMKWYGQAESVQLIEHGDEELPKFQQEYVAIKDTFEFYISVYKSWYKDADLYESHEVEDSFVSLARKFANDNALMYFPDGFPAEWIEQEIIDGEKNWNHFNVKPNDKNIDKICDVWYRYGIMKLQAFDEKVESQLWQDAKTEIKQLMEHEYAR
Ga0206129_1000804619	F016956	AGCAG	MEQYQIKIQKNYKMIETYEVWKAPKKAQLAIIDLAITHIKKVESNPDVETEGDNFDYWNSYELEDGTFVDYNIHCGDEWTRLKQDGSGEYEYTDSSTWSWDVACYAVDPPNQEREYHQIDTDREQYLFSYNKSYGNREVEFENDSL
Ga0206129_1000804620	F023615	N/A	MNRFELEDAMSNLHQIGEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQLHDTRYQKMWDTFEQLIKNGTISDKNTEEL