Scaffold Ga0206129_10004306

Overview

Basic Information

• Taxon OID: 3300020182
• Scaffold ID: Ga0206129_10004306
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15798
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (77.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015794	Metagenome	252	Y
F015798	Metagenome / Metatranscriptome	252	Y
F019395	Metagenome	230	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206129_1000430627	F015794	AGG	MKQNVGLVDLDQRAKRRKHNYLRERYNCETKEILQLFALRGYTLRETANALEMKYSTLKTQAWELNIQFKNGSATIDRNHKVNVDGREVGIKELADKHQMNWKTLSDRLRYGWTAEEAITTPIRNGNWMHREGQDRVPTGTDITSIWLRKAWKL
Ga0206129_100043065	F019395	AGAAG	MWSTVGEVYPVFMPAPVGQTIVVEPQTSQREVTERYSVAKVTGVVAYKDRGPLSTLHWVARC
Ga0206129_100043067	F015798	GAG	MSGMPDFEAGQLVSAVTQLNKDVESLTKTMAKLNDRLAAQEIQLAKGKGMAAGVIILAAALGGVSSYVMGRI