NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206129_10001241

Scaffold Ga0206129_10001241


Overview

Basic Information
Taxon OID3300020182 Open in IMG/M
Scaffold IDGa0206129_10001241 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34781
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (41.18%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022459Metagenome / Metatranscriptome214Y
F024505Metagenome / Metatranscriptome205Y
F030699Metagenome / Metatranscriptome184N
F085166Metagenome / Metatranscriptome111N
F087237Metagenome / Metatranscriptome110N
F092112Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0206129_1000124113F087237N/AMTKIKEAAEVSLSIYNSIDSYRLPEVNRVAHKSLGQVLRSLVELLDNERNKPTDDEPAT
Ga0206129_1000124116F092112N/AMDLRNEIIDVISSIQMLDNHYETIIGEMSDKMEYLRGENTFLIEHNELLDQKIDALAKHLGVKLEQPDTTIRAVKLDEDVA
Ga0206129_1000124121F030699N/AMTDNLDEPPLADIIMDVRENFIYLRNENLRLQEENNQLKQAIAAIKGEATNSL
Ga0206129_1000124123F024505GAGMTEYEILTRHDDMPEGYVGRTYKWAHDEQGAVRLLLKKMPDKTGVCVFKRGGTGKILSTKALS
Ga0206129_1000124126F085166N/AMDTEKTELETLRRSSDDLLHFIAEEQLRFIWVGAMIPESDQSTLGQDTLIIIDQENIELYAGRYFAESEQRIDILREGVEFIMDQEEL
Ga0206129_1000124138F022459N/AMNKHHEAQNEWQLVTDHWVELTLKKYHDRDSDDLTQVFMRGPFAGWSERMVLELAMNMDKANKDVPRHKVDEDNN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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