NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206129_10000051

Scaffold Ga0206129_10000051


Overview

Basic Information
Taxon OID3300020182 Open in IMG/M
Scaffold IDGa0206129_10000051 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)186670
Total Scaffold Genes232 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (14.66%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002698Metagenome / Metatranscriptome536Y
F012164Metagenome / Metatranscriptome283Y
F020365Metagenome / Metatranscriptome224Y
F048336Metagenome / Metatranscriptome148Y
F052204Metagenome / Metatranscriptome143Y
F070154Metagenome / Metatranscriptome123Y
F071304Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0206129_10000051107F071304N/AMKKIKSKLLTYLFTDWVKTEKDVETLLLTRDMITKRKDEISGHTPILGFKSYNQTNY
Ga0206129_10000051109F052204N/AMNVHAETQIKIEFAHGMEITPTIVFEGAELESKTFSNKTHQIEELLDYITYNENGGCDVY
Ga0206129_10000051114F070154N/ALIKYSTRLVFILRNVVIKIPVSRKGYLQGLNEKKIWDKYRDTISLAELKWAWMGIVCQKRYNTVSSIPNNVVIRIKELIPEFGFNNCDLHNPENWGIDGKTYILLDYGVTAYIASLYKQE
Ga0206129_10000051124F012164N/AMSTELKSLKGKNWNEEASEFENTEMSLTRFSGGKEGMKLQLTMRNNGTFFTTIALNKKEIKKLIKELQENFEL
Ga0206129_10000051148F020365N/AMLEIGKREGLVYLTVVLWIIMGILGALKQADLKDLAVYFGSLTAYVATYVWAESKRPSIKSGILKRGPNSRREAMIYSIVCIWAIAGGFAIWFNSNLNDLAVYFVSLTGFVASWIAGEVFTPQDRIGKE
Ga0206129_10000051176F002698N/AMKLVIDRVDQNSLTDFINRVKLIDSFIYMKMDENRITSAVYLPQRDAVKYHAVNTDTIFKLANSPETSKEMKIAFFDGAKVIDAIKHFDNDSIKGEIEFIENDEDLVASTLRLFNDELEITLSCSEPSLGFKDLTQEQINVIFAKDDTSFNFELDTYSIGKVKNLFSLDKDETFAIKSGANGVNVKGKSFNVVINPESNGDGNVTVYKKYLNLLDKEEQNVYISSSKVVFASKDSETLLTVSTCQTA
Ga0206129_1000005149F048336N/AMKKVKLFEEFVNEESISFDKSGVKSKLKDKVRIAKIAVEKWGGSYTKVLKNAEAALKSGKLPNYKEPLMVQGDDKQDDYDIFRGRNSVKLAEKISKVIKKYKKYEVDQSSTGAAGGWSGTMSSTVGGEIQGRANFNPGGRRTYLIAVTCGSGIDSKIKDKMFQELYELFFVMDQYNSLDGGVMFDYSEGTNYDTIGLTNDSYQFGNAASLSDIMNN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.