Basic Information | |
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Taxon OID | 3300020182 Open in IMG/M |
Scaffold ID | Ga0206129_10000051 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 186670 |
Total Scaffold Genes | 232 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (14.66%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002698 | Metagenome / Metatranscriptome | 536 | Y |
F012164 | Metagenome / Metatranscriptome | 283 | Y |
F020365 | Metagenome / Metatranscriptome | 224 | Y |
F048336 | Metagenome / Metatranscriptome | 148 | Y |
F052204 | Metagenome / Metatranscriptome | 143 | Y |
F070154 | Metagenome / Metatranscriptome | 123 | Y |
F071304 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206129_10000051107 | F071304 | N/A | MKKIKSKLLTYLFTDWVKTEKDVETLLLTRDMITKRKDEISGHTPILGFKSYNQTNY |
Ga0206129_10000051109 | F052204 | N/A | MNVHAETQIKIEFAHGMEITPTIVFEGAELESKTFSNKTHQIEELLDYITYNENGGCDVY |
Ga0206129_10000051114 | F070154 | N/A | LIKYSTRLVFILRNVVIKIPVSRKGYLQGLNEKKIWDKYRDTISLAELKWAWMGIVCQKRYNTVSSIPNNVVIRIKELIPEFGFNNCDLHNPENWGIDGKTYILLDYGVTAYIASLYKQE |
Ga0206129_10000051124 | F012164 | N/A | MSTELKSLKGKNWNEEASEFENTEMSLTRFSGGKEGMKLQLTMRNNGTFFTTIALNKKEIKKLIKELQENFEL |
Ga0206129_10000051148 | F020365 | N/A | MLEIGKREGLVYLTVVLWIIMGILGALKQADLKDLAVYFGSLTAYVATYVWAESKRPSIKSGILKRGPNSRREAMIYSIVCIWAIAGGFAIWFNSNLNDLAVYFVSLTGFVASWIAGEVFTPQDRIGKE |
Ga0206129_10000051176 | F002698 | N/A | MKLVIDRVDQNSLTDFINRVKLIDSFIYMKMDENRITSAVYLPQRDAVKYHAVNTDTIFKLANSPETSKEMKIAFFDGAKVIDAIKHFDNDSIKGEIEFIENDEDLVASTLRLFNDELEITLSCSEPSLGFKDLTQEQINVIFAKDDTSFNFELDTYSIGKVKNLFSLDKDETFAIKSGANGVNVKGKSFNVVINPESNGDGNVTVYKKYLNLLDKEEQNVYISSSKVVFASKDSETLLTVSTCQTA |
Ga0206129_1000005149 | F048336 | N/A | MKKVKLFEEFVNEESISFDKSGVKSKLKDKVRIAKIAVEKWGGSYTKVLKNAEAALKSGKLPNYKEPLMVQGDDKQDDYDIFRGRNSVKLAEKISKVIKKYKKYEVDQSSTGAAGGWSGTMSSTVGGEIQGRANFNPGGRRTYLIAVTCGSGIDSKIKDKMFQELYELFFVMDQYNSLDGGVMFDYSEGTNYDTIGLTNDSYQFGNAASLSDIMNN |
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