Scaffold Ga0194134_10076547

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10076547
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1722
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000506	Metagenome / Metatranscriptome	1070	Y
F003153	Metagenome / Metatranscriptome	504	Y
F024109	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_100765471	F024109	N/A	AASTLTLNISSISSPKIVNAASGDLLVSEITVSILTSWS
Ga0194134_100765474	F000506	AGGA	MARLKITRVNGEVSEHKITPGVEYAFELKHGAGISKVLRDHERQTEIYWLAWECLRRANVTVPVFGIEFIDTLDTVEVLDDEKK
Ga0194134_100765475	F003153	AGGAG	MPVVVNGVKQLQKAMREVDGDLNKEMAKNIKVAMLIVRNKARGYLPLQNEVLSGWGKGSASADTFKPGVKIFPPYDYANARDKIAYSAGQNKRSDKGYKAAFYVYNNSRSGAIFETAGRLGKPRGNKSLNPNAPAQFNAAAEMLSSIKGSGKQRGRLIYRAWFEEQNRVTPAVVNAIETAAQKFKTKTEIKKVA