Scaffold Ga0194134_10075431

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10075431
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1740
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054000	Metagenome	140	Y
F082610	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_100754311	F082610	N/A	RRGAYMKFATHDSKGVIGGINWYDSSNVNYRLFIHPTQPYVLKVDMYDEEQDNITGTAAGFSSYYRTNWIAGRTYAQKKMFRRPDIAFKQADSQRTVNIKVFHNYEEASGSERKNFDIILTASGSGMLWGVGEWGVGLWGKESVGVQILNGSNLGFARAVQLLFTGPTSLDWGFDSIAIKYNNRRMTG
Ga0194134_100754314	F054000	GAGG	MSYNPAAYEARRRAYTQQYAATGAMNSYANFLSQQRGARERQNMLRQYDEAQPKVVSAYSRRGMLGPNVRSGVFARGLQELAKQRARNLSEFDQGQMEQQRAYELGEAQRLEAFRNQLADMEMDKASTIADAARQLYQRRMGMV