Scaffold Ga0194134_10053590

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10053590
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2206
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018912	Metagenome	232	Y
F021942	Metagenome / Metatranscriptome	216	N
F050211	Metagenome	145	N
F102547	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_100535901	F021942	N/A	ELQRTAGVSLTIYQPKNLANLIKSRRAKQDNKAVIAQFKKARQAQATVN
Ga0194134_1005359011	F050211	N/A	MIKYNNINVYDVYFCLQDDDGNTLEHKNGKPKLFKYKQEINAPFDYIQTITEDTTLDMLEEIK
Ga0194134_100535903	F102547	AGGAG	MLENKKAQFNIIYVPEKINGVENVEKKSVCRSGLLDDKTKIFTTTKGEIAFCYFDVDRNNYRTAKNKWTINIRG
Ga0194134_100535908	F018912	GAGG	MAEKKLITDEMIANYHKAVIKFNEDIKKERKFRQTLCENFISEWADIIEEIGIRNRKELN