Scaffold Ga0194134_10035475

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10035475
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2952
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067679	Metagenome / Metatranscriptome	125	N
F074773	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_100354751	F074773	N/A	KKGITSAQLQENVLSNPEKYDEKTVKQARLRKTLVGLKKKKNKNNG
Ga0194134_100354754	F067679	GAGG	MVTPAQRQQAQSFLGNVYQNLMTGVGNIFPERFKKGFQAGVELMSPEVQRELVDEGGERILSSISNYSTFAPRFKKELAETKGITFRETPQEFLGAYSARLLTDIGTDSTRHLYWRYNHPMAIADAVVEKVAGPVYKQLNPTQKATIGLAVGAPTAASLGVFDLTNPGELFRPKGFAQTYSELGEEDRRKTSQPGLELFERMFLGRQGRPLKYETAKQDIPDLTPERYDQYMKGFYQDKGITGLGLIKFTPENLQGEPEARIVGFPIGLQSVGALTGGTLGLQQGLKSQTIIKQRGNQTLTEIAPGGTRKTAALTLAGSLAGALLGNLTNKAIASVQNNPEKLPSTMEYQQNM