Scaffold Ga0194134_10018077

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10018077
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4828
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F020860	Metagenome / Metatranscriptome	221	N
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_1001807714	F007359	N/A	MQLVKQNLGGHWVIGIKGDKDRIEQFHNRIYNWGGTNGELQWMSESFAYFWITMEKLERCMFKYTMNSLSDKLGQKFTGTKGGLKQVVLNRVKNTINNIPVENFVKTTQIQDFYTIGQVSAEKLDSDS
Ga0194134_100180776	F035200	GGAG	LTTKFIVLRDGIRVSDDMHDRLEDAEHEANFWREIIKRWPDGTKVTIKKIGGRY
Ga0194134_100180777	F010746	N/A	MTYKCAVSGEAIPPERVEALIVLGVPKTLWTKKEFSQVRKLKAVYAGDDGSNDIVICDNVDGGNLFDNEVAETEIDN
Ga0194134_100180779	F020860	N/A	MNITKVKKLAEGGYALYAIDPKTKQESQVGYIGENLDPKGWLPEGVKIENS