Scaffold Ga0194134_10013391

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10013391
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6040
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F014486	Metagenome / Metatranscriptome	262	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_1001339112	F007359	N/A	MQLVKQNLGSHWVIGIKGKPTDIEQFHNRIYNWGGTNGELHWMSDSFAYFWITMEKLERVMFKYVMNSISDKIGTKFKNKKGGLKNYVLNRVQNTIGNIPVDNFFKTKQEQEFYSIGTISAEKLDEDS
Ga0194134_1001339120	F014486	GGAG	MNIEKLLNENLETFFPWSDDENPPLDSNKTFLQKEKEIDEFFEGWRASM
Ga0194134_100133913	F020860	N/A	MNITKAKKLAEGGYALYAIDLKTKQETQVGYIGENLTLEAWLPQGVKVENS
Ga0194134_100133914	F016115	AGGAG	LKILEESFTSKGFKLQQVKRDGDVAIYKKQLDDPEADNYHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCSSREDADKKFDHLKEKLSNYIATSILPSGEKRGRGRPRKNPLTEKENIVE
Ga0194134_100133915	F010746	AGTAG	MTTHYCSISGEALSPERVEALQVLGVPESQWTKKEYSQVKKLRAVYAGDDGSNDIVICDKVDGGSLFDNEIVAEVE