NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10009792

Scaffold Ga0194134_10009792


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10009792 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7712
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F016772Metagenome / Metatranscriptome244Y
F091423Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0194134_100097922F010817AGGALKNFASILALNFLLVGCATITPDKIQDSTASYDSSTPSNYNKDNGGLIALLDNGAVITSSAKDRYNKLIEMYKIKFKKEKAIELVENSGVTPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVPADNIIDKTIDKINN
Ga0194134_100097923F091423AGAAGVTELFGAVVRLVGGIFEAINNVFGAKNTKEMKERHQAQKEVDHQSDIEKAVKEKDLEKLRKHIGS
Ga0194134_100097924F016772AGGAGMNKLNLIAVALMGIFMVGCSTTNTGGDNQVGGTTAVENALPYIKPAVILACTVVLEQALSPEDRVEKAKMINNIATVVQALTVGQTPTPDQLQKALSDHLPAEKTHWAKYIIAVKDIYAAQFAKLNGDAALAVKVLNAIASGCKDATEEYVE
Ga0194134_100097925F009669N/AMNNMLSKIFGPNWRSSTSGLVTVIAVSTAFVIHGDNSIVAFLPDKLEEYIVGFAKLIAVVSGVVFALTVKDASVTGGTVPQTVEAEKRSHSQKIKSPVDKIGRRNI
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