Scaffold Ga0194134_10008640

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10008640
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8477
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001991	Metagenome / Metatranscriptome	607	Y
F050326	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_100086404	F050326	GAG	MTTPMTALAASTIRHGEFVRLVTSTNTYTFCNAASAITVAGVTYSALGGLLSVGEVNREIKATSGDMVISLVGIDPTNSALVLSSNIKGASVEIARGFFDSNFQIITTPTTQFFMRYRGFVTNVGLSEDFNDEMRVRTATATLSCSSFREVLANRVAGIRTNLQAWQQLYAGDASMSRVAAIAGQFFDFGVPPTTGSQSDPSGDVLNPVSDNLPSQ
Ga0194134_100086407	F001991	GGAGG	LAIFNKNTLTQISGFDNQIIAGELVYNQRTYYNLTLANSDGTPRDLTGATITSQIVRRQLSNVRDSRYGLTFDIADYSPPPSPVNLTITNQQLATGTFTLVIDESAWSVAAADAQLDINASNCVGFSGNVKIALPAAGSTPAEDLIVFLLFLVRSDGVTN