Scaffold Ga0194134_10006203

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10006203
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10866
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005633	Metagenome / Metatranscriptome	394	Y
F006262	Metagenome / Metatranscriptome	377	Y
F010611	Metagenome / Metatranscriptome	301	N
F019637	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_1000620310	F006262	N/A	VFTFTVSIKRAYLRSVYSALGGATLLDALTSKVIAAASVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLIGDYDLAVDLLDQDGISSPTDAEIFDKLMDEVLVAVTSYGGDFSNFRREGTIRTSMT
Ga0194134_1000620313	F010611	N/A	MTQRSYAEHSGLTTGYVTMLVKKGMPMDSIEAADAWRARNIRAKNIRRPTDTIPEEGTAVEQEGPYRPAEASTPIDTATAATDSPEGAYERQRQIERAAYDLAVEALRHRRADAGRLVAIHAAAAKNLTSARDEVTAQAEKERRLVSGDWVKRVMQEHDGAVASLLKAMPKQLSGRIAPHDPEHAERELNRWVQEVALKTLHQTDPWK
Ga0194134_1000620314	F019637	GGA	MPHRHLQFLIDQFGLVTTAWFIRLMKSGTPPEQLAGYCVPDPRDSRRDGVLRALQYAGTVPDSALPENIRTAIRP
Ga0194134_100062037	F005633	N/A	MRIATTISVDRNGKAKIVAGPEVDASLQRSDFNTANVPEGGKLILWIQGALCPKIRKG