Scaffold Ga0194134_10005222

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10005222
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12450
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008617	Metagenome / Metatranscriptome	330	Y
F041151	Metagenome	160	Y
F080003	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_100052221	F041151	N/A	VTTAQDLINQLIAIRSEKEDLEAREQFLRDQIEGSIALGEMDAHQIDDNTYEFDNARYLRCERNSYKHSKNAERAIRAIKEQDIDAG
Ga0194134_100052228	F008617	N/A	MSNNVMNQINNAICCMIMAATFAMIGIEASIHSIPTHSGTQEIHK
Ga0194134_100052229	F080003	AGGA	MDKQTSKLFEVGQVYYGTLPVAHSDFPVRCIKRTDKSVWFEHVTHPQHYAQSRVKVHKYADQEVATFRRWYISSTKQTGGDFDPMTI