Scaffold Ga0194134_10003009

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10003009
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18835
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (24.39%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F015201	Metagenome / Metatranscriptome	256	Y
F042290	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_1000300922	F042290	N/A	MTLTYRGCKYDQEQQAKSDREWWNFAHRPWLCLTYRNVCYFPFVTGGQIK
Ga0194134_1000300923	F015201	GGAGG	MNKALIIYLIDKKKKTTRTNVESVRAIKELEKQKSATF
Ga0194134_1000300938	F001120	N/A	MTKKSPINFDRTIAGFNITERGVKSYTKSIKLGPFQVTLNARQSGLHGSISIPGTGLSKRNIKLI
Ga0194134_1000300941	F001165	N/A	MPSFNDAPKPRIPDSIDSQRLQAMQIVAKMKESADKYGVGFVGGFVSPNGEKFVMSNMTDEDTNMLLPEDLQ
Ga0194134_100030097	F001018	N/A	MTQITHTKLKELNVIQLYEHYGALERSLPLLTPESQELAKAELEACVSLRSEKIDRIYYAMASHEDAVERIKKEKVLIFQAQKHHESQVDSLKGLLNYLKRSLPADTTKITGKNYQFTLVKKKDLTVEVKSSVDDWSSEEQQSFCIQEEVTTTKQIVVRSMSGDVLEERTEPTTKTTVLPNLDAIRHAHQTGKALPTGVKVFQEYGIRSKRIYSKSSVELEASEYPGQFLPED