NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10002499

Scaffold Ga0194134_10002499


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10002499 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21655
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F001531Metagenome / Metatranscriptome676Y
F033006Metagenome / Metatranscriptome178Y
F068608Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000249915F001515AGGMEQVKNSDFDLDFSYGKAGEKLVEDLLSGGKTVEVKRDRRWRETNNIYIEVECWYQSSQSWKPSGLSISYASHWAFVLETSVILIPTYILKNTVLRHGKEITCEIPPNKSKGFLITVDNLLTETKAQK
Ga0194134_1000249917F001531AGGAMGDKNNMNWDDIKKWDYIVDAVALEYARKFEMVEIDDLRQILWVWFSEHPNKFKEWEALGEKNAKNLIYRSLRNQALDYCQKWKAKTIGYDISDLYYYAPEVVEALLPSVLRNEYNNSHKLNLGRIGRPSAPSEGGNVVAMIIEIDYAYWRMGKEDRKILFMRHAESMDFKEMANLLSLGTEDAARMRHKRSINRLIRKLGGFRPFPDVDYPEKKEESDEE
Ga0194134_1000249937F068608AGGAGMVSGGLRPTAKQNNVMSVSGNGGNGQSGKFVAEKVAKATQLRMSGLPQGENIAMEQQIAQGGNVSTTANAANPASKVPSGVSLAELLSSLDTLDSEPTEFRPISDGVDFGDGRGSEVLPKSLSSDTRQIENVELIKKYRNDLVNAARLPGAPDSYKRMVNALLREIL
Ga0194134_1000249938F033006GGAGMRWMENTFFDHLDKFGNSLGYENFGIAFMLSMIPWQSSTDRDDFIREITNEDVKGGEPSTFNLEYLEF
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