Scaffold Ga0194134_10002480

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10002480
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21762
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (65.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055822	Metagenome / Metatranscriptome	138	Y
F090468	Metagenome / Metatranscriptome	108	Y
F091922	Metagenome / Metatranscriptome	107	Y
F095362	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_1000248033	F055822	AGGAG	MAGYTREFLIDAYLWRFTKIPSISIEQLLDLERIANKTYDTYGKDKFRDYSSLDAEYIRNYKADIK
Ga0194134_1000248037	F091922	GGAGG	MSKIVNYTAELENLIANTLLPVYEDYCRRYPFSPLAKEISYDVIREIKYVKDCGALLKPRKNLA
Ga0194134_100024804	F090468	AGG	MKLLEFTYTKQTGDVSKRAVIELVTPTTFVEGWDVTNLDNNEFARFTETMGSLRRRQHEETMQLLQDFDLKHNYRRFKPDSMTDIQIEYV
Ga0194134_1000248051	F095362	GGAG	VNIPVQKKFIEWFYHKPFPSYDSKRNRNGFLGEMLDMDKVDRSTLQYWVQEAFHKGAEAQRELDSEK