Scaffold Ga0194134_10001708

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10001708
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28166
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037691	Metagenome	167	N
F088340	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_1000170823	F088340	N/A	MTLPPLKKTDARDLCVGKQYLIEYVGSHVVSNPRFKGTFIGNILPECEYQCVLSKFTNVLQANFEKTGDMSTTDLSLQDCFYNYYETGALKRAYTRHILQQITGDDNFTFDLY
Ga0194134_100017083	F037691	N/A	MALVVASLLQRDAVLRSIGATNSKIYEILSEYMCGETYIKSKMEKMDIIYKLEVIESYISELPEMVHEKASIHKALTGIHEMCTKLHNELDAILKKIKMHNEKYFYYLRTFDISSDLSNLETHVYNLNHRFKMFLGLMNANGAVCGN