Scaffold Ga0194134_10000498

Overview

Basic Information

• Taxon OID: 3300020179
• Scaffold ID: Ga0194134_10000498
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59966
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (93.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002343	Metagenome / Metatranscriptome	568	Y
F006344	Metagenome	375	Y
F010158	Metagenome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_100004981	F002343	AGGAG	MSDVELKLSLEEAVAITNLIGSLPTSQGAWPLFEKLKAQVEPHLPKSEEVSKQ
Ga0194134_1000049813	F010158	GGA	MTETRLQEPEWVFPFDGMEVGDSFFVPTVKPAEMLYKLDTCAKIAKVRVKAYASSKDGHLGVRVWRIG
Ga0194134_1000049824	F006344	GGAGG	VEIEDDILDLIRALPNEINDTSTTTEMKFLTVGGVLWACHDEIQRLREEVARLKKGSKKK
Ga0194134_1000049875	F002343	AGGAG	MSDVELKLSLEEAVAIVNLIGSLPTSQGAWPLFEKLKAQVEPHLPKSEEVSKQ