Scaffold Ga0181599_1163825

Overview

Basic Information

• Taxon OID: 3300020178
• Scaffold ID: Ga0181599_1163825
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041405US metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 926
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001166	Metagenome / Metatranscriptome	760	Y
F019641	Metagenome / Metatranscriptome	228	N
F034161	Metagenome / Metatranscriptome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181599_11638251	F034161	N/A	KPKLTQGAVSGTSTMPFKSMQELARAQSDPRYKSGDKAYHEEIDRRLSVSNI
Ga0181599_11638252	F001166	AGG	MFKNMATEIGDNVQVKANLAFMAKVIAIVGTCVWGYSVVWNKLMVLDSSLDRVQHEGTLLGDLSARMMHLEKFAEQSKVDLDHLLEMQDSPITSDFQQFERIKYLEKELDRLRDRLENHLMKGQ
Ga0181599_11638253	F019641	AGGA	MGELLMLFITGGGSTAMGAILKGVFGYIFEARQNKHDLEMAREARASDNFLRLQAELAKSGTGEFVSFTRRILAVIGVSTLCACIILCTLFPTAEIVTLTNADGE