NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181556_1027598

Scaffold Ga0181556_1027598


Overview

Basic Information
Taxon OID3300020176 Open in IMG/M
Scaffold IDGa0181556_1027598 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3274
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025493Metagenome / Metatranscriptome201N
F073188Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0181556_10275981F073188N/ANKMHKLGFIHGDLKWDNVGYKNMKQSAPKMYIIDFGLAIKFPRDIRKNMNIVEGIARAYRGIDIRPRHFVKHPENLNKALHRAKDEIRWSGIKRTKKIEENDIMTAALNIVNNKPVKIRIPRDKRVPSLPSKKRMAMSPLNPPYTEMFNGGPPVVRVPPPRNYDPLTLANELNEVLSVALDPNWKPSTPNNTFDPTAYRPYAPPTPRMPSPVAEMLKNDTMDANQIRNVSKNIVNMKSLPENSTITVNINKLKNIKVNMTPIISNDVELEDMMDELMFTYLALLKLSYIKTRKGKLSKKQAENMEALRRGRDMVRKRIKRRLDKYNIKNVEAF
Ga0181556_10275984F025493AGGAMCMVTTARYTQPELRHAMETLDDEVFYAVYRWIMENEHNFSMMGVEMLGMTNSQSIGIATEVIEALLKFSQHTCQEEIKDYTASLVCFVDSAVYALLVNVSKEHFGARRFA
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