Scaffold Ga0181556_1026830

Overview

Basic Information

• Taxon OID: 3300020176
• Scaffold ID: Ga0181556_1026830
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3339
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003377	Metagenome / Metatranscriptome	490	Y
F048668	Metagenome	148	Y
F060645	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181556_10268302	F048668	N/A	MRYFRSTPAVYATICQQLDEAYGYPNAETKTLRTLPLASELPSDAQGRVYLAVSDEYCEYVLPSQLLPKLLASGAVEAVTQAQYKALMPQIP
Ga0181556_10268304	F003377	GAG	MTDAAKDTMLSVLRDYGFSVVVALACGWVLRQDVLLPLVEEHRAFVKQLSETQREISQAITEQTRLLYALQPREKAYTTSVTTPEPGRN
Ga0181556_10268306	F060645	GGGGG	MRFLVAIVIVMAGCVATLPGDGGITADLAAETARMVVRMRAEIAPTPAPPSDGKCQNCDGLGYVGDGRIKITCTACGGTGREPKSVLVRPCPDGKCKP