Scaffold Ga0181556_1006469

Overview

Basic Information

• Taxon OID: 3300020176
• Scaffold ID: Ga0181556_1006469
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8729
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011282	Metagenome	292	Y
F030055	Metagenome	186	Y
F035727	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181556_100646911	F030055	AGGAG	MKHIATLPAVDAHIMIDQGLEHLVVEHGDLTAPLDCYFCPVTGNLWHAYLGTTELYNVLSSAVIDSLEREFALCAYKG
Ga0181556_100646913	F035727	N/A	MIYEHRQIANSILSRLKDGEEFSQSVIRTALRDAGDLAPDRGEGLDQAVQEENQGGGESRGIGMVASNLVRLSEKAWAESRGRLAETHE
Ga0181556_10064695	F011282	N/A	MKKIKNIVVVTGTYTNREGVEKKRYQTIGSLFEDGENFKIKLDTIPLADGGWTGWANCYDLEEKTNTGVRDDIPF