Scaffold Ga0206124_10177125

Overview

Basic Information

• Taxon OID: 3300020175
• Scaffold ID: Ga0206124_10177125
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 850
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032034	Metagenome / Metatranscriptome	181	N
F033784	Metagenome / Metatranscriptome	176	Y
F092860	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206124_101771251	F092860	AGGAG	MSIPLLDKELWEDYADDEQEEAYDMLQDLKAQCDAKPTMLYINEHEELQ
Ga0206124_101771252	F032034	AGGAG	MYIEKTKIKVIGTKYEHGGKEKKNATLSEFNFDDGIQSKDLSKFLQSLQEDQGHRFCGETTCNITIDTSKEY
Ga0206124_101771254	F033784	AGGAGG	MTKRYKVNYTADIWESVIVEADSEEHAKTLFETHDDKYFEAREDEPEQHGMENIEVDLIEDP