NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206124_10136163

Scaffold Ga0206124_10136163


Overview

Basic Information
Taxon OID3300020175 Open in IMG/M
Scaffold IDGa0206124_10136163 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)996
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011192Metagenome / Metatranscriptome294Y
F106085Metagenome / Metatranscriptome100N
F106102Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0206124_101361631F106102N/ATFKDGTEKTYENWQDLDIDYKHNFEEVLILDENWGKVEGLN
Ga0206124_101361634F011192AGGAGGMILAKEMTDKNFINFQDDFYNLLEKYGVGKIDIEHSQFNSICNLRNKVVEFIEQETWEQDNE
Ga0206124_101361636F106085AGGMTNNPLERLRKKLSFLLDNLKNKFRMLIKSKQNNKIIINKDIKNNIPKHLKGLNNKQLKD

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