NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206124_10096806

Scaffold Ga0206124_10096806


Overview

Basic Information
Taxon OID3300020175 Open in IMG/M
Scaffold IDGa0206124_10096806 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1228
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030088Metagenome186Y
F047679Metagenome149N
F082690Metagenome113N
F103249Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0206124_100968062F103249AGGMKSFYHVLDNLQLNDPMRWQGHFIDIETNVECLNNMRQWLTAEWYEKVLLEDELPEFAFMEDDGVVLDMQHELLATLN
Ga0206124_100968063F030088N/AMGFKLNIVTKTKMSAKDMSRTLITLNQSEVFKMGRKMYVPFSAVSVVFNSKGATRKFDKDLDSITHPTRGKLFCLPSNVEQFIKVV
Ga0206124_100968064F047679GGAMTNLETSTAPLVADQEGDHYFMVGETVYYLNEFMKTLGDRDFDGVAHITNQGGIGIKLDEANEEVEYTIFTASY
Ga0206124_100968065F082690N/AMGKECVMCGCDAGEYGNNPAPLHNEGVCCDDCNMEVVMTRVMINRVGRNMEQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.