Scaffold Ga0206124_10068407

Overview

Basic Information

• Taxon OID: 3300020175
• Scaffold ID: Ga0206124_10068407
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1516
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206124_100684073	F003531	AGGAG	MKRKTWTENETELARQLLKTHSYATVGKMLHRSKNSVIGQFYREKIMNGYTPPSNSKYTRKKERNIHVDN
Ga0206124_100684074	F025411	GAG	MSITRVYRDRNNKIKVKKFSFEEVKKDLTKFFSHDNGISNRKDKNETKRIITDTTDS
Ga0206124_100684075	F005656	AGGA	MKLRELLQIQQIVEKRAIPHDVLEFDSQHYSQSKDMTVDILDLHLTHAIRILNNYLTVFEFRDRQEINDHLDVIKDNLDDIKGVVNK