Scaffold Ga0206124_10028191

Overview

Basic Information

• Taxon OID: 3300020175
• Scaffold ID: Ga0206124_10028191
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2658
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F009561	Metagenome / Metatranscriptome	316	N
F023860	Metagenome / Metatranscriptome	208	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206124_100281913	F009561	AGGAG	MTELKDEHLEVISKNKSKKYEIDKMVEQLSDAKESVAVLSNAIECGFLHDKHSLILQEWIVEYEELSQQLDTHLTEVRDHG
Ga0206124_100281916	F023860	GAGG	MDKMKEMFELRNAIRNFLENTLEADIQGAGISVTEPSSADISFKIDNINYTLTIDEE
Ga0206124_100281919	F003677	AGG	MVDEALYFSEKDVGKKVYEIEYEATYITKWQVLADNEAGAFDTWLAENKQDLVTEDGTNCVCSYVKDYTQLGKTQVIAEIKYNKEDDEVYANES