Scaffold Ga0181603_10222160

Overview

Basic Information

• Taxon OID: 3300020174
• Scaffold ID: Ga0181603_10222160
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 769
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Elemovirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003818	Metagenome / Metatranscriptome	467	Y
F058111	Metagenome	135	N
F072293	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181603_102221601	F058111	N/A	MKQVIKNLRDILLYSDSYLFELFVGALHFMILPFAILEIGWLLDVQILGFLIGGFQLYSVSTKSIRFRVTACLLAFILATITVVHYAVVGMLSGSQLGWALVAFMAFINLYRTFNEKLHR
Ga0181603_102221602	F072293	N/A	MNSTFEIAYPTEKTYWIFWTNKTDNFVYGWTEPTQVTDTNQPNWWTTTDEAEWVYKLETEFNTNPFPPESDEDETSN
Ga0181603_102221603	F003818	N/A	LHPNTEQYNALDGYRNGNSVLRFVKDGSDRWIVGLNVLNDPKFSAIHDQLEQLQRIQYTPIPDDE