Scaffold Ga0211729_11392268

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_11392268
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9835
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006660	Metagenome	367	Y
F023091	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_113922683	F006660	GGAG	MSLQTIFDIQQSMTVNNRRTVGQQVSRSGQVRVAQYLTSVPWVFTVTPHNYLYYPQVRNVIQAIDNKDRQLPESISFASTNLSWFVAYQGDLTTGQVNALTLASAPAANATTISVGNLPSVSSSAYVFKAGDFLQMGLYPYKVTDNVLRGSGSTVSVTLHRPVIGTPTVGTLTAVGTACTFYMLAETCPTYTLNPMTNGAFVAWDAPFVFREDITG
Ga0211729_113922688	F023091	GGA	MAVFNKNTLAQVSGFDNPILAGELVYNQNTYWNLTFTNSNTNLPINLTGATINAQIVRRQVTNIIDTRNGLTFDIADYNP